molecular-biology_promoters.arff

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2009-10-30 13:07:09
Description

E. coli promoter gene sequences (DNA) with associated imperfect domain theory
File contents

% 1. Title of Database: E. coli promoter gene sequences (DNA)
%                       with associated imperfect domain theory
% 
% 2. Sources:
%    (a) Creators: 
%        - promoter instances: C. Harley (CHARLEY@McMaster.CA) and R. Reynolds 
%        - non-promoter instances and domain theory: M. Noordewier
%          -- (non-promoters derived from work of lab of Prof. Tom Record, 
%              University of Wisconsin Biochemistry Department)
%    (b) Donor: M. Noordewier and J. Shavlik, {noordewi,shavlik}@cs.wisc.edu
%    (c) Date received: 6/30/90
% 
% 3. Past Usage:
%    (a) biological: 
%        -- Harley, C. and Reynolds, R. 1987.  
%           "Analysis of E. Coli Promoter Sequences."
%           Nucleic Acids Research, 15:2343-2361.
%        machine learning:
%        -- Towell, G., Shavlik, J. and Noordewier, M. 1990.
%           "Refinement of Approximate Domain Theories by Knowledge-Based
%           Artificial Neural Networks." In Proceedings of the Eighth National
%           Conference on Artificial Intelligence (AAAI-90).
%    (b) attributes predicted: member/non-member of class of sequences with
%        biological promoter activity (promoters initiate the process of gene
%        expression).
%    (c) Results of study indicated that machine learning techniques (neural
%        networks, nearest neighbor, contributors' KBANN system) performed as
%        well/better than classification based on canonical pattern matching
%        (method used in biological literature).
% 
% 4. Relevant Information Paragraph:
%    This dataset has been developed to help evaluate a "hybrid" learning
%    algorithm ("KBANN") that uses examples to inductively refine preexisting
%    knowledge.  Using a "leave-one-out" methodology, the following errors
%    were produced by various ML algorithms.  (See Towell, Shavlik, &
%    Noordewier, 1990, for details.)
% 
% 	    System	 Errors		Comments
% 	    ------	 ------		--------
% 	     KBANN	  4/106		a hybrid ML system
% 	     BP		  8/106		std backprop with one hidden layer
% 	     O'Neill	 12/106		ad hoc technique from the bio. lit.
% 	     Near-Neigh  13/106		a nearest-neighbor algo (k=3)
% 	     ID3	 19/106		Quinlan's decision-tree builder
% 	     	
%    Type of domain: non-numeric, nominal (one of A, G, T, C)
%    -- Note: DNA nucleotides can be grouped into a hierarchy, as shown below:
% 
% 		      X (any)
% 		    /   \
% 	  (purine) R     Y (pyrimidine)
% 		  / \   / \
% 		 A   G T   C
% 
%  
% 5. Number of Instances: 106
% 
% 6. Number of Attributes: 59
%    -- class (positive or negative)
%    -- instance name
%    -- 57 sequential nucleotide ("base-pair") positions
% 
% 7. Attribute information:
%    -- Statistics for numeric domains: No numeric features used.
%    -- Statistics for non-numeric domains
%       -- Frequencies:  Promoters Non-Promoters
%                        --------- -------------
%                A        27.7%     24.4%
%                G        20.0%     25.4%
%                T        30.2%     26.5%
%                C        22.1%     23.7%
% 
%    Attribute #:  Description:
%    ============  ============
%              1   One of {+/-}, indicating the class ("+" = promoter).
%              2   The instance name (non-promoters named by position in the
%                  1500-long nucleotide sequence provided by T. Record).
%           3-59   The remaining 57 fields are the sequence, starting at 
%                  position -50 (p-50) and ending at position +7 (p7). Each of
%                  these fields is filled by one of {a, g, t, c}.
% 
% 8. Missing Attribute Values: none
% 
% 9. Class Distribution: 50% (53 positive instances, 53 negative instances)
%
% The Domain Theory (for recognizing promoters):
% 
%    % Promoters have a region where a protein (RNA polymerase) must make contact
%    % and the helical DNA sequence must have a valid conformation so that
%    % the two pieces of the contact region spatially align.
%    % Prolog notation is used.
%     promoter :- contact, conformation.
% 
%    % There are two regions "upstream" from the beginning of the gene
%    % at which the RNA polymerase makes contact.
%     contact  :- minus_35, minus_10.
% 
%    % The following rules describe the compositions of possible contact regions.
%    minus_35 :- p-37=c, p-36=t, p-35=t, p-34=g, p-33=a, p-32=c.
%    minus_35 :-         p-36=t, p-35=t, p-34=g,         p-32=c, p-31=a.
%    minus_35 :-         p-36=t, p-35=t, p-34=g, p-33=a, p-32=c, p-31=a.
%    minus_35 :-         p-36=t, p-35=t, p-34=g, p-33=a, p-32=c.
% 
%    minus_10 :- p-14 t, p-13 a, p-12=t, p-11=a, p-10=a, p-9=t. 
%    minus_10 :-         p-13 t, p-12=a,         p-10=a,        p-8=t.
%    minus_10 :-         p-13 t, p-12=a, p-11=t, p-10=a, p-9=a, p-8=t.
%    minus_10 :-                 p-12=t, p-11=a,                       p-7=t.
% 
%    % The following rules describe sequence characteristics that produce
%    % acceptable conformations.
%    conformation :- p-47=c, p-46=a, p-45=a, p-43=t, p-42=t, p-40=a, p-39=c,
%                    p-22=g, p-18=t, p-16=c, p-8=g,  p-7=c,  p-6=g,  p-5=c,
%                    p-4=c,  p-2=c,  p-1=c. 
%    conformation :- p-45=a, p-44=a, p-41=a.
%    conformation :- p-49=a, p-44=t, p-27=t, p-22=a, p-18=t, p-16=t, p-15=g, 
%                    p-1=a. 
%    conformation :- p-45=a, p-41=a, p-28=t, p-27=t, p-23=t, p-21=a, p-20=a,
% 	           p-17=t, p-15=t, p-4=t.
% 
%    % If exact matches are required, this domain theory matches NONE
%    % of the examples below.  Also note that some of the MINUS_35 rules
%    % are subsumed by another MINUS_35 rule.  This occurs because the
%    % biological evidence is inconclusive wrt the correct specificity.
% 
% 
%
% Information about the dataset
% CLASSTYPE: nominal
% CLASSINDEX: first
%

@relation molecular-biology-promoters

@attribute class {+,-}
@attribute instance {1019,1024,1108,1149,1163,1169,1171,1203,1216,1218,1226,1320,1321,1355,1384,1442,1481,19,217,230,244,260,296,313,35,39,413,464,507,521,557,630,648,660,663,668,751,753,780,794,799,802,835,850,867,91,915,918,93,957,987,988,991,ALAS,AMPC,ARABAD,ARAC,AROH,BIOA,BIOB,DEOP1,DEOP2,FOL,GALP2,GLNS,HIS,HISJ,ILVGEDA,LACI,LACP1,LEU1_TRNA,LEXA,LPP,M1RNA,MALEFG,MALK,MALT,PORI-L,PORI-R,RECA,RPLJ,RPOA,RPOB,RRNAB_P1,RRNAB_P2,RRNDEX_P2,RRND_P1,RRNE_P1,RRNG_P1,RRNG_P2,RRNX_P1,S10,SPC,SPOT42,STR,SUBB-E,THR,TNAA,TRP,TRPP2,TRPR,TUFB,TYRT,UVRBP1,UVRBP3,UVRB_P2}
@attribute p-50 {a,c,g,t}
@attribute p-49 {a,c,g,t}
@attribute p-48 {a,c,g,t}
@attribute p-47 {a,c,g,t}
@attribute p-46 {a,c,g,t}
@attribute p-45 {a,c,g,t}
@attribute p-44 {a,c,g,t}
@attribute p-43 {a,c,g,t}
@attribute p-42 {a,c,g,t}
@attribute p-41 {a,c,g,t}
@attribute p-40 {a,c,g,t}
@attribute p-39 {a,c,g,t}
@attribute p-38 {a,c,g,t}
@attribute p-37 {a,c,g,t}
@attribute p-36 {a,c,g,t}
@attribute p-35 {a,c,g,t}
@attribute p-34 {a,c,g,t}
@attribute p-33 {a,c,g,t}
@attribute p-32 {a,c,g,t}
@attribute p-31 {a,c,g,t}
@attribute p-30 {a,c,g,t}
@attribute p-29 {a,c,g,t}
@attribute p-28 {a,c,g,t}
@attribute p-27 {a,c,g,t}
@attribute p-26 {a,c,g,t}
@attribute p-25 {a,c,g,t}
@attribute p-24 {a,c,g,t}
@attribute p-23 {a,c,g,t}
@attribute p-22 {a,c,g,t}
@attribute p-21 {a,c,g,t}
@attribute p-20 {a,c,g,t}
@attribute p-19 {a,c,g,t}
@attribute p-18 {a,c,g,t}
@attribute p-17 {a,c,g,t}
@attribute p-16 {a,c,g,t}
@attribute p-15 {a,c,g,t}
@attribute p-14 {a,c,g,t}
@attribute p-13 {a,c,g,t}
@attribute p-12 {a,c,g,t}
@attribute p-11 {a,c,g,t}
@attribute p-10 {a,c,g,t}
@attribute p-9 {a,c,g,t}
@attribute p-8 {a,c,g,t}
@attribute p-7 {a,c,g,t}
@attribute p-6 {a,c,g,t}
@attribute p-5 {a,c,g,t}
@attribute p-4 {a,c,g,t}
@attribute p-3 {a,c,g,t}
@attribute p-2 {a,c,g,t}
@attribute p-1 {a,c,g,t}
@attribute p1 {a,c,g,t}
@attribute p2 {a,c,g,t}
@attribute p3 {a,c,g,t}
@attribute p4 {a,c,g,t}
@attribute p5 {a,c,g,t}
@attribute p6 {a,c,g,t}
@attribute p7 {a,c,g,t}

@data
+,S10,t,a,c,t,a,g,c,a,a,t,a,c,g,c,t,t,g,c,g,t,t,c,g,g,t,g,g,t,t,a,a,g,t,a,t,g,t,a,t,a,a,t,g,c,g,c,g,g,g,c,t,t,g,t,c,g,t
+,AMPC,t,g,c,t,a,t,c,c,t,g,a,c,a,g,t,t,g,t,c,a,c,g,c,t,g,a,t,t,g,g,t,g,t,c,g,t,t,a,c,a,a,t,c,t,a,a,c,g,c,a,t,c,g,c,c,a,a
+,AROH,g,t,a,c,t,a,g,a,g,a,a,c,t,a,g,t,g,c,a,t,t,a,g,c,t,t,a,t,t,t,t,t,t,t,g,t,t,a,t,c,a,t,g,c,t,a,a,c,c,a,c,c,c,g,g,c,g
+,DEOP2,a,a,t,t,g,t,g,a,t,g,t,g,t,a,t,c,g,a,a,g,t,g,t,g,t,t,g,c,g,g,a,g,t,a,g,a,t,g,t,t,a,g,a,a,t,a,c,t,a,a,c,a,a,a,c,t,c
+,LEU1_TRNA,t,c,g,a,t,a,a,t,t,a,a,c,t,a,t,t,g,a,c,g,a,a,a,a,g,c,t,g,a,a,a,a,c,c,a,c,t,a,g,a,a,t,g,c,g,c,c,t,c,c,g,t,g,g,t,a,g
+,MALEFG,a,g,g,g,g,c,a,a,g,g,a,g,g,a,t,g,g,a,a,a,g,a,g,g,t,t,g,c,c,g,t,a,t,a,a,a,g,a,a,a,c,t,a,g,a,g,t,c,c,g,t,t,t,a,g,g,t
+,MALK,c,a,g,g,g,g,g,t,g,g,a,g,g,a,t,t,t,a,a,g,c,c,a,t,c,t,c,c,t,g,a,t,g,a,c,g,c,a,t,a,g,t,c,a,g,c,c,c,a,t,c,a,t,g,a,a,t
+,RECA,t,t,t,c,t,a,c,a,a,a,a,c,a,c,t,t,g,a,t,a,c,t,g,t,a,t,g,a,g,c,a,t,a,c,a,g,t,a,t,a,a,t,t,g,c,t,t,c,a,a,c,a,g,a,a,c,a
+,RPOB,c,g,a,c,t,t,a,a,t,a,t,a,c,t,g,c,g,a,c,a,g,g,a,c,g,t,c,c,g,t,t,c,t,g,t,g,t,a,a,a,t,c,g,c,a,a,t,g,a,a,a,t,g,g,t,t,t
+,RRNAB_P1,t,t,t,t,a,a,a,t,t,t,c,c,t,c,t,t,g,t,c,a,g,g,c,c,g,g,a,a,t,a,a,c,t,c,c,c,t,a,t,a,a,t,g,c,g,c,c,a,c,c,a,c,t,g,a,c,a
+,RRNAB_P2,g,c,a,a,a,a,a,t,a,a,a,t,g,c,t,t,g,a,c,t,c,t,g,t,a,g,c,g,g,g,a,a,g,g,c,g,t,a,t,t,a,t,g,c,a,c,a,c,c,c,c,g,c,g,c,c,g
+,RRNDEX_P2,c,c,t,g,a,a,a,t,t,c,a,g,g,g,t,t,g,a,c,t,c,t,g,a,a,a,g,a,g,g,a,a,a,g,c,g,t,a,a,t,a,t,a,c,g,c,c,a,c,c,t,c,g,c,g,a,c
+,RRND_P1,g,a,t,c,a,a,a,a,a,a,a,t,a,c,t,t,g,t,g,c,a,a,a,a,a,a,t,t,g,g,g,a,t,c,c,c,t,a,t,a,a,t,g,c,g,c,c,t,c,c,g,t,t,g,a,g,a
+,RRNE_P1,c,t,g,c,a,a,t,t,t,t,t,c,t,a,t,t,g,c,g,g,c,c,t,g,c,g,g,a,g,a,a,c,t,c,c,c,t,a,t,a,a,t,g,c,g,c,c,t,c,c,a,t,c,g,a,c,a
+,RRNG_P1,t,t,t,a,t,a,t,t,t,t,t,c,g,c,t,t,g,t,c,a,g,g,c,c,g,g,a,a,t,a,a,c,t,c,c,c,t,a,t,a,a,t,g,c,g,c,c,a,c,c,a,c,t,g,a,c,a
+,RRNG_P2,a,a,g,c,a,a,a,g,a,a,a,t,g,c,t,t,g,a,c,t,c,t,g,t,a,g,c,g,g,g,a,a,g,g,c,g,t,a,t,t,a,t,g,c,a,c,a,c,c,g,c,c,g,c,g,c,c
+,RRNX_P1,a,t,g,c,a,t,t,t,t,t,c,c,g,c,t,t,g,t,c,t,t,c,c,t,g,a,g,c,c,g,a,c,t,c,c,c,t,a,t,a,a,t,g,c,g,c,c,t,c,c,a,t,c,g,a,c,a
+,TNAA,a,a,a,c,a,a,t,t,t,c,a,g,a,a,t,a,g,a,c,a,a,a,a,a,c,t,c,t,g,a,g,t,g,t,a,a,t,a,a,t,g,t,a,g,c,c,t,c,g,t,g,t,c,t,t,g,c
+,TYRT,t,c,t,c,a,a,c,g,t,a,a,c,a,c,t,t,t,a,c,a,g,c,g,g,c,g,c,g,t,c,a,t,t,t,g,a,t,a,t,g,a,t,g,c,g,c,c,c,c,g,c,t,t,c,c,c,g
+,ARAC,g,c,a,a,a,t,a,a,t,c,a,a,t,g,t,g,g,a,c,t,t,t,t,c,t,g,c,c,g,t,g,a,t,t,a,t,a,g,a,c,a,c,t,t,t,t,g,t,t,a,c,g,c,g,t,t,t
+,LACI,g,a,c,a,c,c,a,t,c,g,a,a,t,g,g,c,g,c,a,a,a,a,c,c,t,t,t,c,g,c,g,g,t,a,t,g,g,c,a,t,g,a,t,a,g,c,g,c,c,c,g,g,a,a,g,a,g
+,MALT,a,a,a,a,a,c,g,t,c,a,t,c,g,c,t,t,g,c,a,t,t,a,g,a,a,a,g,g,t,t,t,c,t,g,g,c,c,g,a,c,c,t,t,a,t,a,a,c,c,a,t,t,a,a,t,t,a
+,TRP,t,c,t,g,a,a,a,t,g,a,g,c,t,g,t,t,g,a,c,a,a,t,t,a,a,t,c,a,t,c,g,a,a,c,t,a,g,t,t,a,a,c,t,a,g,t,a,c,g,c,a,a,g,t,t,c,a
+,TRPP2,a,c,c,g,g,a,a,g,a,a,a,a,c,c,g,t,g,a,c,a,t,t,t,t,a,a,c,a,c,g,t,t,t,g,t,t,a,c,a,a,g,g,t,a,a,a,g,g,c,g,a,c,g,c,c,g,c
+,THR,a,a,a,t,t,a,a,a,a,t,t,t,t,a,t,t,g,a,c,t,t,a,g,g,t,c,a,c,t,a,a,a,t,a,c,t,t,t,a,a,c,c,a,a,t,a,t,a,g,g,c,a,t,a,g,c,g
+,BIOB,t,t,g,t,c,a,t,a,a,t,c,g,a,c,t,t,g,t,a,a,a,c,c,a,a,a,t,t,g,a,a,a,a,g,a,t,t,t,a,g,g,t,t,t,a,c,a,a,g,t,c,t,a,c,a,c,c
+,FOL,c,a,t,c,c,t,c,g,c,a,c,c,a,g,t,c,g,a,c,g,a,c,g,g,t,t,t,a,c,g,c,t,t,t,a,c,g,t,a,t,a,g,t,g,g,c,g,a,c,a,a,t,t,t,t,t,t
+,UVRBP1,t,c,c,a,g,t,a,t,a,a,t,t,t,g,t,t,g,g,c,a,t,a,a,t,t,a,a,g,t,a,c,g,a,c,g,a,g,t,a,a,a,a,t,t,a,c,a,t,a,c,c,t,g,c,c,c,g
+,UVRBP3,a,c,a,g,t,t,a,t,c,c,a,c,t,a,t,t,c,c,t,g,t,g,g,a,t,a,a,c,c,a,t,g,t,g,t,a,t,t,a,g,a,g,t,t,a,g,a,a,a,a,c,a,c,g,a,g,g
+,LEXA,t,g,t,g,c,a,g,t,t,t,a,t,g,g,t,t,c,c,a,a,a,a,t,c,g,c,c,t,t,t,t,g,c,t,g,t,a,t,a,t,a,c,t,c,a,c,a,g,c,a,t,a,a,c,t,g,t
+,PORI-L,c,t,g,t,t,g,t,t,c,a,g,t,t,t,t,t,g,a,g,t,t,g,t,g,t,a,t,a,a,c,c,c,c,t,c,a,t,t,c,t,g,a,t,c,c,c,a,g,c,t,t,a,t,a,c,g,g
+,SPOT42,a,t,t,a,c,a,a,a,a,a,g,t,g,c,t,t,t,c,t,g,a,a,c,t,g,a,a,c,a,a,a,a,a,a,g,a,g,t,a,a,a,g,t,t,a,g,t,c,g,c,g,t,a,g,g,g,t
+,M1RNA,a,t,g,c,g,c,a,a,c,g,c,g,g,g,g,t,g,a,c,a,a,g,g,g,c,g,c,g,c,a,a,a,c,c,c,t,c,t,a,t,a,c,t,g,c,g,c,g,c,c,g,a,a,g,c,t,g
+,GLNS,t,a,a,a,a,a,a,c,t,a,a,c,a,g,t,t,g,t,c,a,g,c,c,t,g,t,c,c,c,g,c,t,t,a,t,a,a,g,a,t,c,a,t,a,c,g,c,c,g,t,t,a,t,a,c,g,t
+,TUFB,a,t,g,c,a,a,t,t,t,t,t,t,a,g,t,t,g,c,a,t,g,a,a,c,t,c,g,c,a,t,g,t,c,t,c,c,a,t,a,g,a,a,t,g,c,g,c,g,c,t,a,c,t,t,g,a,t
+,SUBB-E,c,c,t,t,g,a,a,a,a,a,g,a,g,g,t,t,g,a,c,g,c,t,g,c,a,a,g,g,c,t,c,t,a,t,a,c,g,c,a,t,a,a,t,g,c,g,c,c,c,c,g,c,a,a,c,g,c
+,STR,t,c,g,t,t,g,t,a,t,a,t,t,t,c,t,t,g,a,c,a,c,c,t,t,t,t,c,g,g,c,a,t,c,g,c,c,c,t,a,a,a,a,t,t,c,g,g,c,g,t,c,c,t,c,a,t,a
+,SPC,c,c,g,t,t,t,a,t,t,t,t,t,t,c,t,a,c,c,c,a,t,a,t,c,c,t,t,g,a,a,g,c,g,g,t,g,t,t,a,t,a,a,t,g,c,c,g,c,g,c,c,c,t,c,g,a,t
+,RPOA,t,t,c,g,c,a,t,a,t,t,t,t,t,c,t,t,g,c,a,a,a,g,t,t,g,g,g,t,t,g,a,g,c,t,g,g,c,t,a,g,a,t,t,a,g,c,c,a,g,c,c,a,a,t,c,t,t
+,RPLJ,t,g,t,a,a,a,c,t,a,a,t,g,c,c,t,t,t,a,c,g,t,g,g,g,c,g,g,t,g,a,t,t,t,t,g,t,c,t,a,c,a,a,t,c,t,t,a,c,c,c,c,c,a,c,g,t,a
+,PORI-R,g,a,t,c,g,c,a,c,g,a,t,c,t,g,t,a,t,a,c,t,t,a,t,t,t,g,a,g,t,a,a,a,t,t,a,a,c,c,c,a,c,g,a,t,c,c,c,a,g,c,c,a,t,t,c,t,t
+,ALAS,a,a,c,g,c,a,t,a,c,g,g,t,a,t,t,t,t,a,c,c,t,t,c,c,c,a,g,t,c,a,a,g,a,a,a,a,c,t,t,a,t,c,t,t,a,t,t,c,c,c,a,c,t,t,t,t,c
+,ARABAD,t,t,a,g,c,g,g,a,t,c,c,t,a,c,c,t,g,a,c,g,c,t,t,t,t,t,a,t,c,g,c,a,a,c,t,c,t,c,t,a,c,t,g,t,t,t,c,t,c,c,a,t,a,c,c,c,g
+,BIOA,g,c,c,t,t,c,t,c,c,a,a,a,a,c,g,t,g,t,t,t,t,t,t,g,t,t,g,t,t,a,a,t,t,c,g,g,t,g,t,a,g,a,c,t,t,g,t,a,a,a,c,c,t,a,a,a,t
+,DEOP1,c,a,g,a,a,a,c,g,t,t,t,t,a,t,t,c,g,a,a,c,a,t,c,g,a,t,c,t,c,g,t,c,t,t,g,t,g,t,t,a,g,a,a,t,t,c,t,a,a,c,a,t,a,c,g,g,t
+,GALP2,c,a,c,t,a,a,t,t,t,a,t,t,c,c,a,t,g,t,c,a,c,a,c,t,t,t,t,c,g,c,a,t,c,t,t,t,g,t,t,a,t,g,c,t,a,t,g,g,t,t,a,t,t,t,c,a,t
+,HIS,a,t,a,t,a,a,a,a,a,a,g,t,t,c,t,t,g,c,t,t,t,c,t,a,a,c,g,t,g,a,a,a,g,t,g,g,t,t,t,a,g,g,t,t,a,a,a,a,g,a,c,a,t,c,a,g,t
+,HISJ,c,a,a,g,g,t,a,g,a,a,t,g,c,t,t,t,g,c,c,t,t,g,t,c,g,g,c,c,t,g,a,t,t,a,a,t,g,g,c,a,c,g,a,t,a,g,t,c,g,c,a,t,c,g,g,a,t
+,ILVGEDA,g,g,c,c,a,a,a,a,a,a,t,a,t,c,t,t,g,t,a,c,t,a,t,t,t,a,c,a,a,a,a,c,c,t,a,t,g,g,t,a,a,c,t,c,t,t,t,a,g,g,c,a,t,t,c,c,t
+,LACP1,t,a,g,g,c,a,c,c,c,c,a,g,g,c,t,t,t,a,c,a,c,t,t,t,a,t,g,c,t,t,c,c,g,g,c,t,c,g,t,a,t,g,t,t,g,t,g,t,g,g,a,a,t,t,g,t,g
+,LPP,c,c,a,t,c,a,a,a,a,a,a,a,t,a,t,t,c,t,c,a,a,c,a,t,a,a,a,a,a,a,c,t,t,t,g,t,g,t,a,a,t,a,c,t,t,g,t,a,a,c,g,c,t,a,c,a,t
+,TRPR,t,g,g,g,g,a,c,g,t,c,g,t,t,a,c,t,g,a,t,c,c,g,c,a,c,g,t,t,t,a,t,g,a,t,a,t,g,c,t,a,t,c,g,t,a,c,t,c,t,t,t,a,g,c,g,a,g
+,UVRB_P2,t,c,a,g,a,a,a,t,a,t,t,a,t,g,g,t,g,a,t,g,a,a,c,t,g,t,t,t,t,t,t,t,a,t,c,c,a,g,t,a,t,a,a,t,t,t,g,t,t,g,g,c,a,t,a,a,t
-,867,a,t,a,t,g,a,a,c,g,t,t,g,a,g,a,c,t,g,c,c,g,c,t,g,a,g,t,t,a,t,c,a,g,c,t,g,t,g,a,a,c,g,a,c,a,t,t,c,t,g,g,c,g,t,c,t,a
-,1169,c,g,a,a,c,g,a,g,t,c,a,a,t,c,a,g,a,c,c,g,c,t,t,t,g,a,c,t,c,t,g,g,t,a,t,t,a,c,t,g,t,g,a,a,c,a,t,t,a,t,t,c,g,t,c,t,c
-,802,c,a,a,t,g,g,c,c,t,c,t,a,a,a,c,g,g,g,t,c,t,t,g,a,g,g,g,g,t,t,t,t,t,t,g,c,t,g,a,a,a,g,g,a,g,g,a,a,c,t,a,t,a,t,g,c,g
-,521,t,t,g,a,c,c,t,a,c,t,a,c,g,c,c,a,g,c,a,t,t,t,t,g,g,c,g,g,t,g,t,a,a,g,c,t,a,a,c,c,a,t,t,c,c,g,g,t,t,g,a,c,t,c,a,a,t
-,918,c,g,t,c,t,a,t,c,g,g,t,g,a,a,c,c,t,c,c,g,g,t,a,t,c,a,a,c,g,c,t,g,g,a,a,g,g,t,g,a,c,g,c,t,a,a,c,g,c,a,g,a,t,g,c,a,g
-,1481,g,c,c,a,a,t,c,a,a,t,c,a,a,g,a,a,c,t,t,g,a,a,g,g,g,t,g,g,t,a,t,c,a,g,c,c,a,a,c,a,g,c,c,t,g,a,c,a,t,c,c,t,t,c,g,t,t
-,1024,t,g,g,a,t,g,g,a,c,g,t,t,c,a,a,c,a,t,t,g,a,g,g,a,a,g,g,c,a,t,a,a,c,g,c,t,a,c,t,a,c,c,t,g,a,t,g,t,t,t,a,c,t,c,c,a,a
-,1149,g,a,g,g,t,g,g,c,t,a,t,g,t,g,t,a,t,g,a,c,c,g,a,a,c,g,a,g,t,c,a,a,t,c,a,g,a,c,c,g,c,t,t,t,g,a,c,t,c,t,g,g,t,a,t,t,a
-,313,c,g,t,a,g,c,g,c,a,t,c,a,g,t,g,c,t,t,t,c,t,t,a,c,t,g,t,g,a,g,t,a,c,g,c,a,c,c,a,g,c,g,c,c,a,g,a,g,g,a,c,g,a,c,g,a,c
-,780,c,g,a,c,c,g,a,a,g,c,g,a,g,c,c,t,c,g,t,c,c,t,c,a,a,t,g,g,c,c,t,c,t,a,a,a,c,g,g,g,t,c,t,t,g,a,g,g,g,g,t,t,t,t,t,t,g
-,1384,c,t,a,c,g,g,t,g,g,g,t,a,c,a,a,t,a,t,g,c,t,g,g,a,t,g,g,a,g,a,t,g,c,g,t,t,c,a,c,t,t,c,t,g,g,t,c,t,a,c,t,g,a,c,t,c,g
-,507,a,t,a,g,t,c,t,c,a,g,a,g,t,c,t,t,g,a,c,c,t,a,c,t,a,c,g,c,c,a,g,c,a,t,t,t,t,g,g,c,g,g,t,g,t,a,a,g,c,t,a,a,c,c,a,t,t
-,39,a,a,c,t,c,a,a,g,g,c,t,g,a,t,a,c,g,g,c,g,a,g,a,c,t,t,g,c,g,a,g,c,c,t,t,g,t,c,c,t,t,g,c,g,g,t,a,c,a,c,a,g,c,a,g,c,g
-,1203,t,t,a,c,t,g,t,g,a,a,c,a,t,t,a,t,t,c,g,t,c,t,c,c,g,c,g,a,c,t,a,c,g,a,t,g,a,g,a,t,g,c,c,t,g,a,g,t,g,c,t,t,c,c,g,t,t
-,988,t,a,t,t,c,t,c,a,a,c,a,a,g,a,t,t,a,a,c,c,g,a,c,a,g,a,t,t,c,a,a,t,c,t,c,g,t,g,g,a,t,g,g,a,c,g,t,t,c,a,a,c,a,t,t,g,a
-,1171,a,a,c,g,a,g,t,c,a,a,t,c,a,g,a,c,c,g,c,t,t,t,g,a,c,t,c,t,g,g,t,a,t,t,a,c,t,g,t,g,a,a,c,a,t,t,a,t,t,c,g,t,c,t,c,c,g
-,753,a,a,g,t,g,c,t,t,a,g,c,t,t,c,a,a,g,g,t,c,a,c,g,g,a,t,a,c,g,a,c,c,g,a,a,g,c,g,a,g,c,c,t,c,g,t,c,c,t,c,a,a,t,g,g,c,c
-,630,g,a,a,g,a,c,c,a,c,g,c,c,t,c,g,c,c,a,c,c,g,a,g,t,a,g,a,c,c,c,t,t,a,g,a,g,a,g,c,a,t,g,t,c,a,g,c,c,t,c,g,a,c,a,a,c,t
-,660,t,t,a,g,a,g,a,g,c,a,t,g,t,c,a,g,c,c,t,c,g,a,c,a,a,c,t,t,g,c,a,t,a,a,a,t,g,c,t,t,t,c,t,t,g,t,a,g,a,c,g,t,g,c,c,c,t
-,1216,t,a,t,t,c,g,t,c,t,c,c,g,c,g,a,c,t,a,c,g,a,t,g,a,g,a,t,g,c,c,t,g,a,g,t,g,c,t,t,c,c,g,t,t,a,c,t,g,g,a,t,t,g,t,c,a,c
-,835,t,g,c,t,g,a,a,a,g,g,a,g,g,a,a,c,t,a,t,a,t,g,c,g,c,t,c,a,t,a,c,g,a,t,a,t,g,a,a,c,g,t,t,g,a,g,a,c,t,g,c,c,g,c,t,g,a
-,35,c,a,t,g,a,a,c,t,c,a,a,g,g,c,t,g,a,t,a,c,g,g,c,g,a,g,a,c,t,t,g,c,g,a,g,c,c,t,t,g,t,c,c,t,t,g,c,g,g,t,a,c,a,c,a,g,c
-,1218,t,t,c,g,t,c,t,c,c,g,c,g,a,c,t,a,c,g,a,t,g,a,g,a,t,g,c,c,t,g,a,g,t,g,c,t,t,c,c,g,t,t,a,c,t,g,g,a,t,t,g,t,c,a,c,c,a
-,668,c,a,t,g,t,c,a,g,c,c,t,c,g,a,c,a,a,c,t,t,g,c,a,t,a,a,a,t,g,c,t,t,t,c,t,t,g,t,a,g,a,c,g,t,g,c,c,c,t,a,c,g,c,g,c,t,t
-,413,a,g,g,a,g,g,a,a,c,t,a,c,g,c,a,a,g,g,t,t,g,g,a,a,c,a,t,c,g,g,a,g,a,g,a,t,g,c,c,a,g,c,c,a,g,c,g,c,a,c,c,t,g,c,a,c,g
-,991,t,c,t,c,a,a,c,a,a,g,a,t,t,a,a,c,c,g,a,c,a,g,a,t,t,c,a,a,t,c,t,c,g,t,g,g,a,t,g,g,a,c,g,t,t,c,a,a,c,a,t,t,g,a,g,g,a
-,751,t,g,a,a,g,t,g,c,t,t,a,g,c,t,t,c,a,a,g,g,t,c,a,c,g,g,a,t,a,c,g,a,c,c,g,a,a,g,c,g,a,g,c,c,t,c,g,t,c,c,t,c,a,a,t,g,g
-,850,c,t,a,t,a,t,g,c,g,c,t,c,a,t,a,c,g,a,t,a,t,g,a,a,c,g,t,t,g,a,g,a,c,t,g,c,c,g,c,t,g,a,g,t,t,a,t,c,a,g,c,t,g,t,g,a,a
-,93,g,c,g,g,c,a,g,c,a,c,g,t,t,t,c,c,a,c,g,c,g,g,t,g,a,g,a,g,c,c,t,c,a,g,g,a,t,t,c,a,t,g,t,c,g,a,t,g,t,c,t,t,c,c,g,g,t
-,1108,a,t,c,c,c,t,a,a,t,g,t,c,t,a,c,t,t,c,c,g,g,t,c,a,a,t,c,c,a,t,c,t,a,c,g,t,t,a,a,c,c,g,a,g,g,t,g,g,c,t,a,t,g,t,g,t,a
-,915,t,g,g,c,g,t,c,t,a,t,c,g,g,t,g,a,a,c,c,t,c,c,g,g,t,a,t,c,a,a,c,g,c,t,g,g,a,a,g,g,t,g,a,c,g,c,t,a,a,c,g,c,a,g,a,t,g
-,1019,t,c,t,c,g,t,g,g,a,t,g,g,a,c,g,t,t,c,a,a,c,a,t,t,g,a,g,g,a,a,g,g,c,a,t,a,a,c,g,c,t,a,c,t,a,c,c,t,g,a,t,g,t,t,t,a,c
-,19,t,a,t,t,g,g,c,t,t,g,c,t,c,a,a,g,c,a,t,g,a,a,c,t,c,a,a,g,g,c,t,g,a,t,a,c,g,g,c,g,a,g,a,c,t,t,g,c,g,a,g,c,c,t,t,g,t
-,1320,t,a,g,a,g,g,g,t,g,t,a,c,t,c,c,a,a,g,a,a,g,a,g,g,a,a,g,a,t,g,a,g,g,c,t,a,g,a,c,g,t,c,t,c,t,g,c,a,t,g,g,a,g,t,a,t,g
-,91,c,a,g,c,g,g,c,a,g,c,a,c,g,t,t,t,c,c,a,c,g,c,g,g,t,g,a,g,a,g,c,c,t,c,a,g,g,a,t,t,c,a,t,g,t,c,g,a,t,g,t,c,t,t,c,c,g
-,217,t,t,a,c,g,t,t,g,g,c,g,a,c,c,g,c,t,a,g,g,a,c,t,t,t,c,t,t,g,t,t,g,a,t,t,t,t,c,c,a,t,g,c,g,g,t,g,t,t,t,t,g,c,g,c,a,a
-,957,a,c,g,c,t,a,a,c,g,c,a,g,a,t,g,c,a,g,c,g,a,a,c,g,c,t,c,g,g,c,g,t,a,t,t,c,t,c,a,a,c,a,a,g,a,t,t,a,a,c,c,g,a,c,a,g,a
-,260,g,g,t,g,t,t,t,t,g,c,g,c,a,a,t,g,t,t,a,a,t,c,g,c,t,t,t,g,t,a,c,a,c,c,t,c,a,g,g,c,a,t,g,t,a,a,a,c,g,t,c,t,t,c,g,t,a
-,557,a,a,c,c,a,t,t,c,c,g,g,t,t,g,a,c,t,c,a,a,t,g,a,g,c,a,t,c,t,c,g,a,t,g,c,a,g,c,g,t,a,c,t,c,c,t,a,c,a,t,g,a,a,t,a,g,a
-,1355,a,g,a,c,g,t,c,t,c,t,g,c,a,t,g,g,a,g,t,a,t,g,a,g,a,t,g,g,a,c,t,a,c,g,g,t,g,g,g,t,a,c,a,a,t,a,t,g,c,t,g,g,a,t,g,g,a
-,244,t,g,t,t,g,a,t,t,t,t,c,c,a,t,g,c,g,g,t,g,t,t,t,t,g,c,g,c,a,a,t,g,t,t,a,a,t,c,g,c,t,t,t,g,t,a,c,a,c,c,t,c,a,g,g,c,a
-,464,t,g,c,a,c,g,g,g,t,t,g,c,g,a,t,a,g,c,c,t,c,a,g,c,g,t,a,t,t,c,a,g,g,t,g,c,g,a,g,t,t,c,g,a,t,a,g,t,c,t,c,a,g,a,g,t,c
-,296,a,g,g,c,a,t,g,t,a,a,a,c,g,t,c,t,t,c,g,t,a,g,c,g,c,a,t,c,a,g,t,g,c,t,t,t,c,t,t,a,c,t,g,t,g,a,g,t,a,c,g,c,a,c,c,a,g
-,648,c,c,g,a,g,t,a,g,a,c,c,c,t,t,a,g,a,g,a,g,c,a,t,g,t,c,a,g,c,c,t,c,g,a,c,a,a,c,t,t,g,c,a,t,a,a,a,t,g,c,t,t,t,c,t,t,g
-,230,c,g,c,t,a,g,g,a,c,t,t,t,c,t,t,g,t,t,g,a,t,t,t,t,c,c,a,t,g,c,g,g,t,g,t,t,t,t,g,c,g,c,a,a,t,g,t,t,a,a,t,c,g,c,t,t,t
-,1163,t,a,t,g,a,c,c,g,a,a,c,g,a,g,t,c,a,a,t,c,a,g,a,c,c,g,c,t,t,t,g,a,c,t,c,t,g,g,t,a,t,t,a,c,t,g,t,g,a,a,c,a,t,t,a,t,t
-,1321,a,g,a,g,g,g,t,g,t,a,c,t,c,c,a,a,g,a,a,g,a,g,g,a,a,g,a,t,g,a,g,g,c,t,a,g,a,c,g,t,c,t,c,t,g,c,a,t,g,g,a,g,t,a,t,g,a
-,663,g,a,g,a,g,c,a,t,g,t,c,a,g,c,c,t,c,g,a,c,a,a,c,t,t,g,c,a,t,a,a,a,t,g,c,t,t,t,c,t,t,g,t,a,g,a,c,g,t,g,c,c,c,t,a,c,g
-,799,c,c,t,c,a,a,t,g,g,c,c,t,c,t,a,a,a,c,g,g,g,t,c,t,t,g,a,g,g,g,g,t,t,t,t,t,t,g,c,t,g,a,a,a,g,g,a,g,g,a,a,c,t,a,t,a,t
-,987,g,t,a,t,t,c,t,c,a,a,c,a,a,g,a,t,t,a,a,c,c,g,a,c,a,g,a,t,t,c,a,a,t,c,t,c,g,t,g,g,a,t,g,g,a,c,g,t,t,c,a,a,c,a,t,t,g
-,1226,c,g,c,g,a,c,t,a,c,g,a,t,g,a,g,a,t,g,c,c,t,g,a,g,t,g,c,t,t,c,c,g,t,t,a,c,t,g,g,a,t,t,g,t,c,a,c,c,a,a,g,g,c,t,t,c,c
-,794,c,t,c,g,t,c,c,t,c,a,a,t,g,g,c,c,t,c,t,a,a,a,c,g,g,g,t,c,t,t,g,a,g,g,g,g,t,t,t,t,t,t,g,c,t,g,a,a,a,g,g,a,g,g,a,a,c
-,1442,t,a,a,c,a,t,t,a,a,t,a,a,a,t,a,a,g,g,a,g,g,c,t,c,t,a,a,t,g,g,c,a,c,t,c,a,t,t,a,g,c,c,a,a,t,c,a,a,t,c,a,a,g,a,a,c,t

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